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U.K. Launching Genetic Sequencing Database for Medical Research

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U.K. Launching Genetic Sequencing Database for Medical Research

The United Kingdom’s National Health Service is launching a large-scale database that will include the genetic sequences of as many as 100,000 U.K. residents with cancer and rare diseases, Reuters reports.

Project Details

Participation in the database project will be voluntary, and patients will be able to opt out without affecting their care.

The U.K. government has allocated $160 million over the next three to five years to fund the project (Kelland, Reuters, 12/10).

Certain aspects of the project have yet to be decided, such as:

  • When the sequencing will start;
  • Who will perform the sequencing and analysis; and
  • Which patients are eligible for the genetic testing.

Project Goals

The database project aims to improve physicians’ understanding of patients’:

  • Genetic make-up;
  • Condition; and
  • Treatment needs.

The database also would allow researchers to compare the genetic profiles of large numbers of patients, which could lead to the development of new targeted cancer treatments.

Sally Davies — chief medical officer for England — said the project “opens up the possibility of being able to look at the three billion DNA pieces in each of us so we can get a greater understanding of the complex relationship between our genes and lifestyle” (Walsh, BBC News, 12/10).

Privacy Concerns

Despite the potential benefits of the database, privacy advocates are raising concerns that patients’ genetic information could be shared with third parties, such as drug companies. Some advocates say that organizations with access to the database potentially could use the genetic codes to identify and track individual patients (Reuters, 12/10).

However, U.K. officials say that the database only will be used for medical research (BBC News, 12/10).

In addition, Prime Minister David Cameron’s office has stated that the genetic data would be made anonymous before it is stored (Reuters, 12/10).

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Scientists Say Mining EHR Data Could Boost Medical Research

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Scientists Say Mining EHR Data Could Boost Medical Research

Although the primary goals of electronic health record systems are to improve efficiency and reduce costs, the technology also provides an opportunity to mine data for medical research, the New York Times reports.

About Mining EHR Data

Mining data from EHR systems could help researchers evaluate the outcomes and side effects of specific treatments.

Russ Altman — a physician and professor of bioengineering and genetics at Stanford University — said that medical discoveries always have been based on “hunches,” but mining data from EHR systems would make it possible “to see if a hunch has statistical merit.”

Some scientists say that large-scale monitoring and analysis of EHR data could make all patients participants in a vast, ongoing clinical trial.

According to Nicholas Tatonetti — assistant professor of biomedical informatics at Columbia University — mining EHR data is faster and less expensive than setting up traditional clinical trials.

Challenges to Mining EHR Data

Despite its potential benefits, there are several challenges that are hindering the mining of EHR data.

According to the Times, the biggest challenge to mining EHR data relates to privacy concerns. Each EHR used for research must be stripped of all information that potentially could be used to identify the patient.

However, it is important for researchers to know when they are examining EHRs that are from the same patient but stored in different EHR systems.

According to Tatonetti, another challenge impeding the mining of EHR data is the fact that information in an EHR might be incorrect and diagnostic codes might be unreliable because they are used for billing purposes.

In addition, Tatonetti noted that physicians generally refrain from ordering follow-up tests that have no clinical usefulness, even though such tests potentially could contribute valuable information to data mining-based research efforts (Jaret, New York Times, 1/14).

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Social Media Tools Can Help HIV-Prevention Efforts, Study Finds

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Facebook and other social networking tools could help prevent HIV infection among at-risk groups, according to a study published in the journal Sexually Transmitted Diseases, Medical News Today reports. Study Details For the study, researchers recruited 112 men who have sex with men, 90% of whom were African-American or Latino. Participants were recruited through: Banner advertisements on social networking websites, such as Facebook and MySpace; Banner ads and posts on Craigslist; A Facebook fan page with study information; and Venues such as bars, schools, gyms and community organizations. Participants randomly were assigned to either a general health group on Facebook or a confidential HIV-prevention group on the social networking site. Study Findings The study found that participants assigned to the private HIV-prevention group discussed HIV-related topics, including: Advocacy; Knowledge; Prevention; Stigma; and Testing. According to the study, participants in the HIV-prevention group who were over the age of 31 were more likely to discuss prevention, testing, stigma and advocacy, while participants younger than age 31 were more likely to discuss general HIV information. The study also found that participants in the HIV-prevention group who posted about prevention and testing were 11 times more likely to request an HIV testing kit than participants who did not discuss those topics. Comments on Study Sean Young — principal investigator and assistant professor at the University of California-Los Angeles’ David Geffen School of Medicine — said the study demonstrates that “participants will use social media to learn about HIV prevention and that those who talk about HIV prevention over social networking groups are not just talking about it — they are acting on their words by getting an HIV test.” However, researchers said that because all participants were from the Los Angeles area, the findings might not be applicable to men from other areas (Medical News Today, 2/11).

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Federal Officials Release New EHR Format for Pediatric Care

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Federal Officials Release New EHR Format for Pediatric Care

On Wednesday, the Agency for Healthcare Research and Quality and CMS released a new electronic health record format for pediatric care, Health Data Management reports (Goedert, Health Data Management, 2/7).

Goals of New Format

The new format aims to help EHR vendors develop modules that are tailored to children’s health needs (McKinney, Modern Healthcare, 2/7).

Officials said the new format was warranted because current EHR systems are not appropriately set up to capture or process children’s health data, resulting in lower EHR adoption rates among pediatric physicians.

Recommended Data Elements, Functionalities

The new EHR format outlines a minimum set of data elements and standards that could serve as a blueprint for EHR developers. The recommended data elements and functionalities are grouped into topic areas, such as:

  • Age- and weight-based dosing;
  • Child abuse reporting;
  • Growth data plotting;
  • Immunization decision support tools;
  • Information for children with special needs; and
  • Prenatal and newborn screening tests (McCann, Healthcare IT News, 2/7).

The new format also includes guidance on interoperability to facilitate information exchange between inpatient, primary care and school-based settings (Health Data Management, 2/7).

Next Steps

AHRQ officials said the new format will be tested in Pennsylvania and North Carolina.

In addition, CMS officials said they are looking to integrate the new format into later editions of the Office of the National Coordinator for Health IT’s standards and certification criteria for EHR systems. Under the 2009 federal economic stimulus package, health care providers who demonstrate meaningful use of certified EHR systems can qualify for Medicaid and Medicare incentive payments (Healthcare IT News, 2/7).

 

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AHIMA Pushes for More Focus on Clinical Documentation in EHRs

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AHIMA Pushes for More Focus on Clinical Documentation in EHRs

At a Health IT Policy Committee hearing on Wednesday, the American Health Information Management Association warned that inadequate focus on clinical documentation could compromise the use of electronic health records, Health Data Management reports (Goedert, Health Data Management, 2/13).

Challenges

Michelle Dougherty, director of research and development at the association, told the committee that there are three main challenges to clinical documentation and record management in EHR systems:

  • Meeting health care providers’ business requirements for patients’ record of care;
  • Managing, preserving and disclosing health records; and
  • Focusing on data quality, information integrity and documentation practices to achieve policy goals related to EHRs.

Dougherty said, “It’s crucial to address data quality and record integrity now before health information exchanges become widespread” (AHIMA release, 2/13).

Recommendations

AHIMA offered several recommendations for addressing clinical documentation in EHRs, including:

 

  • Advancing health care information management and governance;
  • Implementing health IT standards for record management and evidentiary support;
  • Re-evaluating medical record regulations and policies to ensure consistent and contemporary requirements; and
  • Tapping the expertise of health information management professionals to advance EHRs (Health Data Management, 2/13).

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Critic: EHR Mistakes Occurring Amid Adoption ‘Mania’ in U.S.

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Mistakes caused by electronic health records are more prevalent than proponents of the technology believe, according to a leading critic of the nationwide push to adopt EHRs, the Kaiser Health News/Philadelphia Inquirer reports.
Background
Health care providers increasingly are adopting EHRs amid increased federal funding for health IT and findings from government officials and researchers that computers can reduce mistakes and boost efficiency in the health care industry.
However, Scot Silverstein — a physician, a Drexel University adjunct professor of health care informatics and former director of scientific information for Merck — has been an outspoken opponent of the rapid transition to EHRs.
Silverstein’s Comments
According to Silverstein, the notion that EHRs prevent more mistakes than they cause is not proven. He argues that many EHR-related mistakes might go unreported because the government does not require providers to report such problems.
He said, “We’re in the midst of a mania right now” to switch to EHRs. He added, “We know [EHR adoption] causes harm, and we don’t even know the level of magnitude.”
According to Silverstein, a growing collection of evidence suggests that poorly designed software can obscure clinical data and generate incorrect treatment orders, among other problems.
For example, malfunctioning software at Lifespan hospital group in 2011 led to the printing of orders for the wrong medication regimen for patients, he said.
Silverstein recommends that all EHR systems undergo rigorous testing under federal supervision before being used in situations where a patient’s life could be at risk.
Reaction to Silverstein’s Comments
An Office of the National Coordinator for Health IT spokesperson said that it is “important to listen to all the voices” in the discussion of EHRs.
George Lundberg — a physician and editor-at-large for MedPage Today — said Silverstein “is an essential critic of the field.” Lundberg said, “It’s too easy for those of us in medicine to get excessively enthusiastic about things that look like they’re going to work out really well. Sometimes we go too far and don’t see the downside of things.”
The HIMSS Electronic Health Record Association declined to comment on Silverstein’s remarks (Hancock, Kaiser Health News/Philadelphia Inquirer, 2/18).

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Growth Factor Can Improve Damaged Lungs

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In a study of mice, researchers ahave identified a new molecular pathway involved in the growth of tiny air sacs called alveoli that are crucial for breathing. The experiments may lead to the first successful treatments to regrow the air sacs in people who suffer from diseases such as emphysema, shown above. 

In a study of mice, researchers at Johns Hopkins have identified a new molecular pathway involved in the growth of tiny air sacs called alveoli that are crucial for breathing. The scientists said their experiments may lead to the first successful treatments to regrow the air sacs in people who suffer from diseases such as emphysema in which the air sacs have been destroyed by years of smoking. The work may also suggest new therapy for premature infants born before their lungs are fully developed.
“One of the most daunting challenges we face as physicians is helping patients with chronic obstructive pulmonary disease, such as emphysema, who have lost alveoli that are so crucial for lung function,” said Enid Neptune, associate professor of pulmonary and critical care medicine at the Johns Hopkins University School of Medicine. “Once those tiny air sacs are destroyed, there are no effective treatments to bring them back.”
Neptune is the senior author of a study described in an article in PLOS Genetics, in which the researchers used hepatocyte growth factor (HGF) to regrow alveoli and restore lung structure in mice genetically engineered to develop a human-like form of emphysema. Theirs is believed to be the first study using HGF in mice with established emphysema.
Growth factors, such as HGF, have been used to promote wound healing. Neptune said previous studies had shown that HGF had a role in the functioning of alveoli, which enable lungs to exchange oxygen and carbon dioxide and send oxygen into the bloodstream to nourish organs throughout the body. Reduction in the number or quality of the sacs seriously compromises breathing.
Even though they cannot be seen by the naked eye, tiny, spherical alveoli are covered with thin walls and have a blood supply. The researchers conducted experiments in mice with a genetically induced form of emphysema to see if HGF could stimulate the formation of alveoli.
One experiment involved adult mice with genetically induced emphysema. Half of the mice received HGF, delivered under the skin using a special pump for two weeks. The other half of the group received a placebo – not the HGF. Another group of mice with healthy lungs, the “control” group, was divided in half to receive either HGF or a placebo.
“We found that the mice with emphysema, when given the HGF, developed a 17 percent improvement in the size of their air sacs compared to placebo-treated mice, consistent with improved lung structure and function. The HGF also was protective, preventing destruction of the alveoli by reducing the oxidative stress that contributes to lung injury,” said Neptune. “In essence, the HGF was able to block a major enemy of the functioning alveoli.”
In addition, the healthy mice that received HGF showed no difference in alveolar size. The mice with emphysema that were treated with a placebo did not show any improvement.
The researchers then wanted to see the effect of impaired HGF activity in young mice whose lungs were still forming. They created a mouse in which the HGF receptor, known as MET, was removed from the cells lining the alveoli. “Our idea was if HGF was performing this important role in alveoli formation, if we knocked out its receptor, known as MET, we should see damage to the alveoli,” said Neptune.
As predicted, the air sacs in the developing mice without the HGF receptor did not form correctly. Also, the blood vessels serving the alveoli were reduced and there was an increase in both oxidative stress and inflammation. The researchers concluded that developing alveoli require both HGF and MET signaling in order to form normally.
“Our research is an important demonstration that a growth factor can be used as a drug for emphysema,” Neptune said. “However, since HGF reduces cell death and promotes cell proliferation, we would have to be cautious about translating it to the smoking population where there’s a higher risk of lung cancer.” she adds. Neptune and others are pursuing research to be able to selectively activate the therapeutic and not the malignancy-inducing components of HGF signaling.
Emphysema is a form of chronic obstructive pulmonary disease (COPD), which is the third-leading cause of death in the United States. An estimated 30 million Americans have COPD and about 60,000 people die from it each year. In addition to smoking, occupational exposure to harmful dust, fumes and smoke can also cause COPD.
The title of the article is “Hepatocyte Growth Factor, a Determinant of Airspace Homeostasis in the Murine Lung.”
The study was funded by Neptune’s NIH RO1 grant# 1R01HL085312 and also by a March of Dimes Basil O’Connor Award to Neptune.
Other authors are: Carla Calvi, Megan Podowski, Armando Lopez-Mercado, Shana Metzger, Kaori Misono, Alla Malinina, Dustin Dikeman, Hataya Poonyagariyon, Leslie Ynalvez, Roshanak Derakhshandeh, Ann Le, Mark Merchant and Ralph Schwall (deceased).

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Nasal Spray Developed from Seaweed Bacteria

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A team of scientists and surgeons are developing a new nasal spray from a marine microbe, Bacillus licheniformis found on the surface of seaweed, to help clear chronic sinusitis. 

A team of scientists and surgeons from Newcastle are developing a new nasal spray from a marine microbe to help clear chronic sinusitis.
They are using an enzyme isolated from a marine bacterium Bacillus licheniformis found on the surface of seaweed which the scientists at Newcastle University were originally researching for the purpose of cleaning the hulls of ships.
Published in PLOS ONE, they describe how in many cases of chronic sinusitis the bacteria form a biofilm, a slimy protective barrier which can protect them from sprays or antibiotics. In vitro experiments showed that the enzyme, called NucB dispersed 58 percent of biofilms.
“In effect, the enzyme breaks down the extracellular DNA, which is acting like a glue to hold the cells to the surface of the sinuses. In the lab, NucB cleared over half of the organisms we tested,” said Nicholas Jakubovics of Newcastle University
Sinusitis with or without polyps is one of the most common reasons people go to their GP and affects more than 10 percent of adults in the UK and Europe. Mohamed Reda Elbadawey, Consultant of Otolaryngology Head and Neck Surgery, Freeman Hospital– part of the Newcastle Hospitals NHS Foundation Trust– was prompted to contact the Newcastle University researchers after a student patient mentioned a lecture on the discovery of NucB and they are now working together to explore its medical potential.
“Sinusitis is all too common and a huge burden on the NHS. For many people, symptoms include a blocked nose, nasal discharge or congestion, recurrent headaches, loss of the sense of smell and facial pain. While steroid nasal sprays and antibiotics can help some people, for the patients I see, they have not been effective and these patients have to undergo the stress of surgery. If we can develop an alternative we could benefit thousands of patients a year,” said Elbadawey.
In the research, the team collected mucous and sinus biopsy samples from 20 different patients and isolated between two and six different species of bacteria from each individual. Twenty-four different strains were investigated in the laboratory and all produced biofilms containing significant amounts of extracellular DNA. Biofilms formed by 14 strains were disrupted by treatment with the novel bacterial deoxyribonuclease, NucB.
When under threat, bacteria shield themselves in a slimy protective barrier. This slimy layer, known as a biofilm, is made up of bacteria held together by a web of extracellular DNA which adheres the bacteria to each other and to a solid surface– in this case in the lining of the sinuses. The biofilm protects the bacteria from attack by antibiotics and makes it very difficult to clear them from the sinuses.
In previous studies of the marine bacterium Bacillus licheniformis, Newcastle University scientists led by marine microbiologist Professor Grant Burgess found that when the bacteria want to move on, they release an enzyme which breaks down the external DNA, breaking up the biofilm and releasing the bacteria from the web. When the enzyme NucB was purified and added to other biofilms it quickly dissolved the slime exposing the bacterial cells, leaving them vulnerable.
The team’s next step is to further test and develop the product and they are looking to set up collaboration with industry.

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Mobile Devices Linked to Better Health

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More than 6 billion people worldwide now carry mobile phones, which could be used to enhance mental and physical health, aresearcher proposed.
More than 6 billion people worldwide (including almost 400 million in the United States) now carry mobile phones, which could be used to enhance mental and physical health, a Cornell researcher proposed.

Phones can give owners important information about their environment, offer advice and reminders to encourage healthy behavior and supply mountains of data to researchers, said Deborah Estrin, professor of computer science at Cornell NYC Tech in New York City.

Estrin outlined her vision for “mobile health” in the presentation “Transforming Health Care Through Mobile Platforms,” part of the symposium Smart Phones, Smart Devices, Social Networks, and Smart Health Care, at the 2013 Annual Meeting of the American Association for the Advancement of Science in Boston. The symposium, chaired by Google vice president Vinton Cerf, explored how emerging “net-centric societies” will transform the health care landscape.

“We can leverage the power and ubiquity of mobile and cloud technologies to assist individuals, clinicians and researchers in monitoring and managing symptoms, side effects and treatment outside the clinical setting; and to address the lifestyle factors that can bring on or exacerbate health conditions,” Estrin said.

Health-enhancing applications of mobile devices might include diet and exercise tracking, medication reminders, monitoring of social and environmental stress and the formation of online support groups. As examples, Estrin cites PTSD Coach, developed by the Department of Defense and the Veteran’s Administration to help veterans cope with post-traumatic stress disorder symptoms; mobile reporting from a diabetic’s glucose meter; and the Fitbit wireless activity tracker.

While there are many applications for dedicated devices, Estrin said she is particularly interested in converting phone apps into data streams. “An app like PTSD Coach is used by a participant as a source of assistance, but the data analytics that the app generates- when and where they use it, how frequently, to what effect (they rate their symptoms going in and out of each tool)- is a rich source of info for their clinician,” she said.

GPS tracking, she added, can show how much a person is moving around, and that can be a “behavioral biomarker” for arthritis pain. For privacy, apps would show the clinician a summary of movement, not reporting specifically where the patient went.

Estrin advocates “scaling down” to make apps that are useful to individual patients. Useful apps will proliferate, allowing researchers to collect data from large populations and learn what works.

Mobile phones also could be used by citizens to document pollution sources and other environmental hazards with their GPS coordinates, enabling municipalities to map trouble areas. Individuals could in turn access such maps and other databases, for example to choose a jogging route with the least air pollution.

To make all this happen, Estrin said, computer scientists should develop new techniques to analyze the “digital exhaust” from the use of mobile apps and devices, along with standards and privacy mechanisms.

Estrin was the founding director of the Center for Embedded Networked Sensing at the University of California-Los Angeles, which explores the use of distributed sensors and actuators- the so-called “Internet of things”- to collect information about the physical world, and is co-founder of the nonprofit Open mHealth, devoted to using mobile devices to enhance mental health. Open mHealth is developing Ohmage, a suite of open-source software tools for use in building mobile health apps.

The first faculty member of the new Cornell Tech campus, with a joint appointment as professor of public health at Weill Cornell Medical College, Estrin was named as one of the Brilliant 10 in Popular Science magazine, one of Wired Magazine’s 2012 50 People Who Will Change the World and one of CNN’s 10 Most Powerful Women in Tech.

Source: Cornell University

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Truth & Facking Coke Obesity Ad

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Fake Ad:

Actual Ad on Coke Website

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Study: Computer Model Could Curb Costs, Improve Patient Care

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Improve Patient Care

The use of computer models and machine-learning algorithms could reduce health care costs and improve patient outcomes, according to a study published in the journal Artificial Intelligence in MedicineComputerworld reports.

Study Details

For the study, researchers at Indiana University randomly selected 500 patients from the Centerstone Research Institute database. The database houses clinical data, demographics and other information on 6,700 patients, 60% to 70% of whom had both clinical depression and a concurrent physical disorder such as diabetes or hypertension.

Researchers then used the selected patients’ data to compare actual doctor performance and patient outcomes against simulated outcomes generated by an artificial intelligence framework (Mearian, Computerworld, 2/12).

Framework Details

The framework combines two mathematical modeling formulas, known as Markov Decision Processes and Dynamic Decision Networks. The framework uses the formulas and sequential decisionmaking to:

  • Simulate the effects of a variety of treatment paths;
  • Maintain predictions about the status of a patient’s health, even when certain data are unavailable or uncertain; and
  • Refine treatment plans as new information becomes available (Medical News Today, 2/13).

The computer model is not specific to a particular disease, so it could be used to analyze any diagnosis or disorder.

Study Findings

By running the patient data through the machine-learning algorithm, researchers found that the artificial intelligence framework could have generated a 30% to 35% increase in positive patient outcomes.

Casey Bennett — a study co-author and PhD student at Indiana University — said, “And we determined that tweaking certain model parameters could enhance the outcome advantage to about 50% more improvement at about half the cost.”

For example, the cost of using the computer model to diagnose and treat a patient is about $189, compared with a cost of about $497 for usual treatment (Computerworld, 2/12).

Comments on Study

Kris Hauser — a study co-author and assistant professor of computer science at Indiana University — said, “Modeling lets us see more possibility out to a further point, which is something that is hard for a doctor to do.” Hauser added that physicians “just don’t have all of that information available to them.”

Bennett said, “[W]e believe that the most effective long-term path could be combining artificial intelligence with human clinicians. Let humans do what they do well, and let machines do what they do well. In the end, we may maximize the potential of both” (Indiana University release, 2/11).

Computer Model Could Curb Costs, Improve Patient Care

Source: http://www.ihealthbeat.org/articles/2013/2/13/study-computer-model-could-curb-costs-improve-patient-care.aspx#ixzz2KpOZ5JhU

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Don’t forget to take your medicine

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Don’t forget to take your medicine
UI study to examine medication use in central Iowa
BY:  ANNE MATTHES |
The University of Iowa College of Pharmacy has obtained a grant to evaluate medication usage by patients in central Iowa. The goal: Improve the rate at which patients take drugs as prescribed.
According to the nonprofit, independent New England Health Institute, only half of all patients take their medications properly as prescribed, which costs the nation more than $290 billion annually. One idea to improve the medication-usage rate is through accountable care organizations, also known as ACOs. In this model, hospitals, physicians, and other partners in the healthcare delivery system seek to improve quality and reduce cost of care.
The UI will partner with Trinity Pioneer ACO, which includes Trimark Physicians Group, Trinity Regional Medical Center, Berryhill Center for Mental Health and Iowa Health Home Care, OutcomesMTM, the Iowa Pharmacy Association and 25 pharmacies to analyze the impact of integrating community pharmacy and advanced medication management strategies within an existing Pioneer ACO in central Iowa. Trinity Pioneer ACO serves approximately 7,700 Medicare beneficiaries. The project will operate for two years in these counties: Buena Vista, Calhoun, Hamilton, Humboldt, Pocahontas, Sac, Webster, and Wright.
“The research will create a meaningful link between community pharmacists and physicians in the Trinity Pioneer ACO that we hope will improve the health outcomes of Iowans through more coordinated care,” says William Doucette, professor in the College of Pharmacy and the lead researcher on the grant. “When health care providers work as a team, patients benefit and costs decrease, and that is exactly what we aim to see in this study.”
The $302,000 grant comes from the National Association of Chain Drug Stores Foundation. Two other institutions, the University of Nebraska and North Dakota State University, received grants, announced this week by the foundation.
Contacts
Anne Matthes, Pharmacy, 319-335-8780

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